Archive for the ‘SciLit’ Category

Primate Transcript and Protein Expression Levels Evolve Under Compensatory Selection Pressures

Friday, December 6th, 2013

Primate Transcript and Protein #Expression Levels Evolve Under Compensatory #Selection Pressures: [Protein]<[mRNA]
https://www.sciencemag.org/content/342/6162/1100

Are Isle Royale’s Wolves Chasing Extinction?

Friday, December 6th, 2013

Are Isle Royale’s Wolves Chasing Extinction? Maybe from
#globalwarming; now population of ~10 wolves & ~1000 moose
http://www.sciencemag.org/content/340/6135/919.summary

Evidence of Abundant Purifying Selection in Humans for Recently Acquired Regulatory Functions

Friday, December 6th, 2013

Evidence of Abundant Purifying Selection in Humans for Recently Acquired Regulatory Functions
L Ward & M Kellis
http://www.sciencemag.org/content/337/6102/1675.abs

In general we know that conservation across species and within humans are correlated. In this paper the authors focus on emphasize the exceptions to this trend. They show that although only ~5% of the human genome is conserved across mammals, regulatory regions in an additional 4% of the genomes are conserved amongst humans. They also show that some elements are conserved across mammals but lack functional activity from ENCODE data and also do not show purifying selection amongst humans. The authors pinpoint regulatory regions near color vision and nerve-growth genes for that show human-specific constraint. This has been criticized in various publications since there are other genes that are higher up in the authors’ list but harder to explain for lineage-specific constraint.

Differential relationship of DNA replication timing to different forms of human mutation and variation.

Friday, December 6th, 2013

http://www.ncbi.nlm.nih.gov/pubmed/23176822
Am J Hum Genet. 2012 Dec 7;91(6):1033-40. doi:
10.1016/j.ajhg.2012.10.018. Epub 2012 Nov 21.
Differential relationship of DNA replication timing to different forms of human mutation and variation.
Koren A, Polak P, Nemesh J, Michaelson JJ, Sebat J, Sunyaev SR, McCarroll SA.

Following the Flavor

Friday, December 6th, 2013

Great tidbits on how olives & wine seem less sour together than individually

Following the Flavor. Great tidbits on retronasal olfaction & how combos #taste different together than individually
http://www.sciencemag.org/content/340/6134/808.summary

Impact of Shale Gas Development on Regional Water Quality

Friday, December 6th, 2013

http://www.sciencemag.org/content/340/6134/1235009.abstract

Impact of Shale #Gas Development on Regional Water Quality: Disposal of #fracking wastewater will be a future issue
http://www.sciencemag.org/content/340/6134/1235009.abstract

1000 Genomes Selection Browser 1.0: a genome browser dedicated to signatures of natural selection in modern humans

Sunday, December 1st, 2013

Looks useful!

http://nar.oxfordjournals.org/content/early/2013/11/24/nar.gkt1188

Cell – Trnp1 Regulates Expansion and Folding of the Mammalian Cerebral Cortex by Control of Radial Glial Fate

Saturday, November 30th, 2013

Trnp1 Regulates Expansion and Folding of the Mammalian Cerebral #Cortex: less in mice gives more human-like folds
http://www.cell.com/retrieve/pii/S0092867413003498

And a Glossary of Their Quarry

Friday, November 29th, 2013

Glossary of Their Quarry. #exoplanet types: circumbinary, pulsar, core & rogue. Hot Jupiters, waterworlds, #exomoons
http://www.sciencemag.org/content/340/6132/570.summary

And a Glossary of Their Quarry.

Quoting from the podcast summary…

QT:{{”

So far, scientists have uncovered over 800 exoplanets roaming the cosmos—but as Sara Seager said earlier, we’re still searching for that Earth-like, Goldilocks planet.

Most of the planets we’ve discovered up until this point are what’s called Hot

Jupiters, which are gas giants about the size of Jupiter in our solar system with a pretty

big range on either side, so the smallest Hot Jupiters would be about 50 Earth masses.

The nastiest place to live would probably be pulsar planets.

And I

think another really unpleasant place to be would be a core planet. So core planets, they

sort of resemble something like Mercury, the size of Mercury, maybe even smaller.

I think just like in the solar system, actually, some of the best places for potentially

finding life outside of our solar system might be moons. So we call them exomoons or

moons orbiting exoplanets.

But we have seen and are seeing more and more of are theses
circumbinary planets,

which means a planet with two suns. So, Tatooine is sort of the iconic example.

Yes, waterworlds. So those are pretty diverse, and they are usually super-Earth-size so

they’ll be like 10 times the mass of Earth.

And then there are some planets that just go rogue.

“}}

A list of highly influential biomedical researchers, 1996–2011 – Boyack – 2013 – European Journal of Clin ical Investigation – Wiley Online Library

Wednesday, November 27th, 2013

http://onlinelibrary.wiley.com/doi/10.1111/eci.12171/full

~15M authors => ~150K w/ H>=20 => ~500 w/ highest citations &/or H >75 => 407 w/ further filters => 13 in Genomics & 4 from Yale