Posts Tagged ‘mtg’

new CommonMind paper

Thursday, December 22nd, 2016

Gene expr. elucidates functional impact of…risk for SCZ CMC resource contains >2.1M #eQTLs involving ~1.6M SNPs


Gene expression elucidates functional impact of polygenic risk for schizophrenia

Menachem Fromer,
Panos Roussos,
Solveig K Sieberts,
Jessica S Johnson,
David H Kavanagh,
Thanneer M Perumal,
Douglas M Ruderfer,
Eric E Schadt,
Keisuke Hirai,
Kathryn Roeder,
Kristen J Brennand,
Nicholas Katsanis,
Enrico Domenici,
Bernie Devlin
& Pamela Sklar

Gamma frequency entrainment attenuates amyloid load and modifies microglia : Nature : Nature Research

Monday, December 19th, 2016

Gamma frequency entrainment attenuates amyloid load & modifies microglia Buying a 40 Hz light to fight Alzheimer’s!

PLOS Computational Biology: Discovering Transcription Factor Binding Sites in Highly Repetitive Regions of Genomes with Multi-Read Analysis of ChIP-Seq Data

Sunday, April 3rd, 2016

Discovering TFBSs in…Repetitive Regions of #Genomes with Multi-Read
Analysis CSEM uses EM to refine site occupancy

Chung D, Kuan PF, Li B, SanalKumar R, Liang K, Bresnick E, Dewey C, and Keles S (2011), “Discovering transcription factor binding sites in highly repetitive regions of genomes with multi-read analysis of ChIP-Seq data,” PLoS Computational Biology, 7(7): e1002111


High-throughput DNA sequence data compression

Sunday, August 9th, 2015

DNA sequence…#compression Nice review comparing approaches on 2 axes: classic v Nextgen & reference-based v -free

Not much on LD-based approaches

Zexuan Zhu
Yongpeng Zhang
Zhen Ji
Shan He
Xiao Yang

Brief Bioinform (2015) 16 (1): 1-15.doi: 10.1093/bib/bbt087
First published online: December 3, 2013