Posts Tagged ‘jr’

The single-cell transcriptional landscape of mammalian organogenesis

Friday, March 1st, 2019

Using single-cell combinatorial indexing, we profiled the
transcriptomes of around 2 million cells derived from 61 embryos staged between 9.5 and 13.5 days of gestation, in a single experiment.

https://www.nature.com/articles/s41586-019-0969-x.epdf

CBC Marketplace piece about DNA Testing

Saturday, November 3rd, 2018

https://www.youtube.com/watch?v=endTjMd1CW4

FITBIT tracking activity

Thursday, October 4th, 2018

.@Fitbit’s 150 billion hours of heart data reveal secrets about health, by @Pogue
https://finance.Yahoo.com/news/exclusive-fitbits-150-billion-hours-heart-data-reveals-secrets-human-health-133124215.html One interesting observation: “You see heart rate go up before your family reunions, & then tend to really take a long time to come back after it.”
QT:{{”
“Kind of wild to see how starting to use a treadmill — the first regular cardio workouts I’ve ever really gotten — visibly lowered my entire heart-rate range.
Also, it turns out that having kidney stones is bad for you. My heart rate went through the roof both times.
I was surprised and amused, though, to see the second most stressful events on my graph: holiday get-togethers.
“You see the heart rate go up before your family reunions, and then tend to really take a long time to come back after it,” notes McLean. In other words — who knew?? — holidays with the family are not a guarantee of peace, relaxation, and joy.
“}}

iPhone, iPad, Mac Buyer’s Guide: Know When to Buy

Saturday, July 21st, 2018

https://buyersguide.macrumors.com/

Shows each product relative to its “cycle”

Analyzing 1.1 Billion NYC Taxi and Uber Trips, with a Vengeance

Tuesday, May 22nd, 2018

Thoughts on @R_Thaler & @CassSunstein’s Nudge
http://BLOG.gerstein.info/2018/05/thoughts-on-thaler-sunsteins-nudge.html General points about human decision making, with practical
implications for one’s day-to-day life HT @Rozowsky

Google discontinues the RSS feed from Google Calendars

Wednesday, June 14th, 2017

$GOOGL ends #gcal RSS & public #photos homepage; thought I could trust it for stability
https://ProductForums.Google.com/forum/#!msg/photos/8QqjlFdYzyc/1_YCwkYWBwAJ
+ https://www.404TechSupport.com/2015/10/06/google-discontinue-feed-google-calendars/ On Fri, Jun 2, 2017 at 10:54 PM, Mark Gerstein wrote:

Network Analysis: 60-second animation shows how divided Congress has become over the last 60 years

Friday, June 9th, 2017

#Network Analysis [highlighting #modularity change]: Animation shows how divided Congress has become over…60 yrs https://www.YouTube.com/watch?v=tEczkhfLwqM

A Big Bang model of human colorectal tumor growth : Nature Genetics : Nature Research

Wednesday, June 7th, 2017

https://www.nature.com/ng/journal/v47/n3/full/ng.3214.html

Big Bang model of…tumor growth, v. slow #evolution under selection https://www.Nature.com/ng/journal/v47/n3/full/ng.3214.html #Cancer is born w/ key mutations all there

Andrea Sottoriva,
Haeyoun Kang,
Zhicheng Ma,
Trevor A Graham,
Matthew P Salomon,
Junsong Zhao,
Paul Marjoram,
Kimberly Siegmund,
Michael F Press,
Darryl Shibata
& Christina Curtis

Nature Genetics 47, 209–216 (2015) doi:10.1038/ng.3214

CATO score

Monday, May 29th, 2017

Seq. variants influencing…TF occupancy
http://www.Nature.com/ng/journal/v47/n12/full/ng.3432.html Uses allelic analysis to develop the CATO score, how variants alter binding

QT:{{”
This approach resulted in a simple scoring scheme, termed contextual analysis of transcription factor occupancy (CATO), that provides a recalibrated probability of affecting the binding of any transcription factor, as well as a quantitatively ranked list of transcription factor families whose binding might be altered.
“}}

IHEC Consortium Papers (Cell + other journals)

Monday, November 28th, 2016

#IHECpapers rollout http://www.Cell.com/consortium/ihec Gr8 work! incl. #privacy, normal breast epigenetics, ETG links, deconvolution, #allelic activity