Posts Tagged ‘entex’

Characterizing the Major Structural Variant Alleles of the Human Genome: Cell

Monday, November 11th, 2019

DNA methylation age of human tissues and cell types | Genome Biology | Full Text

Sunday, October 27th, 2019

Published: 10 December 2013
DNA methylation age of human tissues and cell types
Steve Horvath
Genome Biology volume 14, Article number: 3156 (2013)

GWAS ATLAS resource

Saturday, August 24th, 2019

A global overview of pleiotropy and genetic architecture in complex traits

Kyoko Watanabe, Sven Stringer, Oleksandr Frei, Maša Umićević Mirkov, Christiaan de Leeuw, Tinca J. C. Polderman, Sophie van der Sluis, Ole A. Andreassen, Benjamin M. Neale & Danielle Posthuma

Genome-wide analysis of polymerase III-transcribed Alu elements suggests cell-type-specific enhancer function.

Sunday, August 18th, 2019

Single Cell Resource for Mouse

Saturday, August 3rd, 2019


Tabula Muris is a compendium of single cell transcriptome data from the model organism Mus musculus, containing nearly 100,000 cells from 20 organs and tissues. The data allow for direct and controlled comparison of gene expression in cell types shared between tissues, such as immune cells from distinct anatomical locations. They also allow for a comparison of two distinct technical approaches: “}}

Leveraging molecular QTL to understand the genetic architecture of diseases and complex traits | bioRxiv

Thursday, July 12th, 2018

Leveraging molecular QTL to understand the genetic architecture of diseases and complex traits

Farhad Hormozdiari, Steven Gazal, Bryce van de Geijn, Hilary Finucane, Chelsea J.-T. Ju, Po-Ru Loh, Armin Schoech, Yakir Reshef, Xuanyao Liu, Luke O’Connor, Alexander Gusev, Eleazar Eskin, Alkes Price

differential Hi-C analysis

Wednesday, July 11th, 2018

It is kind of a similar idea about finding the differential chromatin interactions

mammalian tissue expression database

Saturday, June 2nd, 2018

curated tissue expression database for mammalians: human, mouse, rat, pig

paper: a relevant figure:

illumina platinum genomes paper

Tuesday, January 10th, 2017

Set of 5.4M phased…variants…from seq. a 3-gen. 17-member [CEPH] pedigree, centered on #NA12878 $ILMN Pt genomes

A reference data set of 5.4 million phased human
variants validated by genetic inheritance from
sequencing a three-generation 17-member pedigree

Michael A. Eberle,1 Epameinondas Fritzilas,2 Peter Krusche,2 Morten Källberg,2 Benjamin L. Moore,2 Mitchell A. Bekritsky,2 Zamin Iqbal,3 Han-Yu Chuang,1 Sean J. Humphray,2 Aaron L. Halpern,1 Semyon Kruglyak,1 Elliott H. Margulies,1 Gil McVean,3,4 and David R. Bentley2

Scientists are assembling a new picture of humanity

Sunday, December 4th, 2016

Assembling a new picture of humanity by @CarlZimmer 1 graph to represent everyone, counterpoint to #personalgenomes