Posts Tagged ‘from_dw’

Nature 03142018 Single cell rnaseq of development of human brain Pfc

Sunday, March 18th, 2018

https://www.nature.com/articles/nature25980

A single-cell RNA-seq survey of the developmental landscape of the human prefrontal cortex

Suijuan Zhong
, Shu Zhang
[…]
Xiaoqun Wang
Nature
doi:10.1038/nature25980

A survey of human brain transcriptome diversity at the single cell level

Wednesday, June 28th, 2017

Brain #transcriptome diversity at the single cell level
http://www.PNAS.org/content/112/23/7285 Has useful gene-exp. profiles of specific neural cell types

has profiles for 185 biomarker genes for 6 cell types

R package: variancePartition

Sunday, November 13th, 2016

https://bioconductor.org/packages/release/bioc/html/variancePartition.html

new tool in psychencode meeting

Authorship solution

Thursday, July 28th, 2016

A solution to a perennial problem: Co-first “author ordering determined by coin flip” – eg
http://onlinelibrary.wiley.com/wol1/doi/10.1002/anie.201604431/full & https://arxiv.org/pdf/1412.6980v8.pdf

similar
https://arxiv.org/pdf/1412.6980v8.pdf
∗Equal contribution. Author ordering determined by coin flip over a Google Hangout.

Single-cell ChIP-seq

Friday, October 23rd, 2015

#Singlecell ChIPseq reveals…subpopulations defined by chromatin statehttp://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.3383.html Sparse data: on order of 1K uniq. reads/cell

http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.3383.html

Lessons from modENCODE

Saturday, July 11th, 2015

http://www.annualreviews.org/doi/abs/10.1146/annurev-genom-090413-025448

Publication delays at PLOS and 3,475 other journals

Monday, July 6th, 2015

#Publication delays at PLOS & 3,475 other[s] by @dhimmel http://blog.dhimmel.com/plos-and-publishing-delays Perhaps journals should provide on-time stats as airlines do

paper on cancer driver genes in RECOMB 2014

Sunday, April 6th, 2014

paper from RECOMB 2014 might be interesting to you, which uses
hitting time in random walk to identify cancer drivers.

http://link.springer.com/chapter/10.1007%2F978-3-319-05269-4_23

HIT.nDRIVE: Multi-Driver Gene Prioritization based on Hitting Time

Raunak Shrestha, Ermin Hodzic, Jake Yeung, Kendric Wang, Thomas
Sauerwald, Phuong Dao, Shawn Anderson, Himisha Beltran, Mark A. Rubin,
Colin Collins, Gholamreza Haffari and S. Cenk Sahinalp.