Archive for the ‘SciLit’ Category

PLOS Computational Biology: Spatial Generalization in Operant Learning: Lessons from Professional Basketball

Monday, September 29th, 2014

Spatial Generalization in… Learning: Lessons from… #Basketball http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003623 How past success changes your tendencies to shoot

Describes constructing a learning matrix for how a player will update his tendency to shoot
from a certain region of the court based on his past successes or failures

The Parable of Google Flu: Traps in Big Data Analysis

Monday, September 29th, 2014

Parable of #Google Flu: Traps in #BigData Analysis http://www.sciencemag.org/content/343/6176/1203.summary Replicating results is hard, w/ an ever-changing search algorithm

Mentions http://www.google.com/trends/correlate

Blood transciptome paper

Sunday, September 28th, 2014

Splicing changes along the blood lineage, good ex. of the
state-of-the-art in human transcriptomics
http://www.sciencemag.org/content/345/6204/1251033.abstract

Science 26 September 2014:
Vol. 345 no. 6204
DOI: 10.1126/science.1251033

Transcriptional diversity during lineage commitment of human blood progenitors

Chen et al.

Phylomemetics—Evolutionary Analysis beyond the Gene

Sunday, September 21st, 2014

Phylomemetics—Evolutionary Analysis beyond the Gene
http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001069 #Phylogenetics for texts, languages & artifacts (w/ recoding)

BoxPlotR: a web tool for generation of box plots

Sunday, September 21st, 2014

They published a paper on a web tool to generate box plots !! http://www.nature.com/nmeth/journal/v11/n2/full/nmeth.2811.html QT:{{”
Despite the obvious advantages of the box plot for simultaneous representation of data set and statistical parameters, this method is not in common use, in part because few available software tools allow the facile generation of box plots. For example, the standard spreadsheet tool Excel is unable to generate box plots.

M.S. and J.W. conceived of the box plot tool
“}}

Related:
http://bioinformatics.oxfordjournals.org/content/early/2014/01/21/bioinformatics.btu038.abstract

1309.6001 Co-evolutionary dynamics in social networks: A case study of Twitter

Friday, September 19th, 2014

http://arxiv.org/abs/1309.6001

PLOS Computational Biology: Ten Simple Rules of Live Tweeting at Scientific Conferences

Friday, September 19th, 2014

10… Rules of Live Tweeting at Sci #Conferences by @eperlste http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003789 Great list but no mention of #crowdsourced note taking

Is ecology explaining less and less?

Monday, September 15th, 2014

Is #ecology explaining less & less? http://news.sciencemag.org/biology/2014/08/ecology-explaining-less-and-less Over 100yr & 18k papers: more #pvalues but falling <r2>. What’s P for this trend?

Biostatistics: iCluster | Memorial Sloan Kettering Cancer Center

Wednesday, September 10th, 2014

simultaneously clustering of cancer data across data types, in a sense related to orthoclust
http://www.mskcc.org/research/epidemiology-biostatistics/biostatistics/icluster

PLOS Computational Biology: Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

Wednesday, September 10th, 2014

http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003531