Posts Tagged ‘mynotes0mg’
Monday, September 11th, 2017
#Network propagation [by Markov walks, heat flow, diffusion, &c]: a universal amplifier of genetic associations
http://www.Nature.com/nrg/journal/v18/n9/abs/nrg.2017.38.html
Lenore Cowen,
Trey Ideker,
Benjamin J. Raphael
& Roded Sharan
http://www.nature.com/nrg/journal/v18/n9/abs/nrg.2017.38.html?foxtrotcallback=true
Posted in SciLit | Tags: dc, from, from_jclub, jclub, mynotes0mg, network | No Comments »
Tuesday, September 5th, 2017
Structural Memory Influences Ligand-Binding Mode http://pubs.ACS.org/doi/abs/10.1021/acs.jctc.5b01052 Rearrangement of #solvation layer is ~100x slower than unbinding
J Chem Theory Comput. 2016 Mar 8;12(3):1393-9. doi:
10.1021/acs.jctc.5b01052. Epub 2016 Feb 3.
Xu M, Caflisch A, Hamm P.
Posted in SciLit | Tags: from, gpmtg, jclub, jobtalk, mynotes0mg, simulation, solvation, xm17 | No Comments »
Tuesday, September 5th, 2017
Hayward, Nicholas K., et al. "Whole-genome landscapes of major melanoma subtypes." Nature 545.7653 (2017): 175-180.
Whole-genome landscapes of…#melanoma subtypes http://www.Nature.com/nature/journal/vaop/ncurrent/full/nature22071.html Sun-exposed cutaneous w. many C>T SNVs v acral/mucosal w. many SVs
Posted in SciLit | Tags: cancer, from, from_jclub, from_xl, jclub, melanoma, mynotes0mg, XL | No Comments »
Monday, August 14th, 2017
Naldi, A. et al. Reconstruction and signal propagation analysis of the Syk signaling network in breast cancer cells. PLOS Computational Biology 13, e1005432 (2017).
Reconstruction & signal propagation analysis of the Syk signaling #network http://journals.PLoS.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005432 Inferring potential targets of the kinase
Posted in SciLit | Tags: from, from_LL, fromjclub, jclub, LL, mynotes0mg, network | No Comments »
Tuesday, August 1st, 2017
Eval of Chromatin Accessibility [via #ATACSeq] in DLPFC of SCZ Cases/Ctrls, by @JulienBryois et al.
http://www.BiorXiv.org/content/early/2017/05/25/141986 List of cQTLs
Posted in SciLit | Tags: atacseq, brain, capstone4, cQTL, from, from_jclub, jclub, mynotes0mg, psychencode, sl | No Comments »
Sunday, July 23rd, 2017
WGS & Social-#Network Analysis of a TB Outbreak http://www.NEJM.org/doi/full/10.1056/NEJMoa1003176 Nice tech combo but not sure transmission & phylogeny are consistent
Posted in SciLit | Tags: from, from_jclub, jclub, jl, mynotes0mg, network, wgs | No Comments »