linkstream2 microblog

https://www.dropbox.com/s/7og7f9hycc70rus/2018-08-14%2016.21.56.jpg?dl=0

https://youtu.be/7DbslbKsQSk
note taking to a whole different level

a link to details on IvyPlus exchange program:
https://gsas.yale.edu/academics/exchanges/exchange-scholar-program-ivyplus-exchange

turns out Imperial College London is the institution that left U of London. UCL is still part of U of London
indeed: https://www.theguardian.com/education/2005/dec/09/highereducation.administration

.@RedMonk Programming Language Rankings
http://redmonk.com/sogrady/2016/07/20/language-rankings-6-16/ Now in a period of little change after an initial “Cambrian” diversification

I recently had to complete my 2015 Faculty Activity Report (FAR), summarizing key lab “activities” of last year. (Sounds a bit like summer camp.)

Here are some excerpts:

* A full updated CV describing my lab’s activities (in too much detail):

http://archive.gersteinlab.org/public-docs/2016/01.31/cv57/M-Gerstein-Full-CV-28Jan16-publ.pdf

* This is mostly based on compiling the people in the lab in ’15 & the papers they’ve worked on :

http://archive.gersteinlab.org/public-docs/2016/01.31/cv57/papers-page-dump-28Jan16/
http://archive.gersteinlab.org/public-docs/2016/01.31/cv57/people-page-dump-28Jan16/

There’s also an update on lectures in ’15:
http://lectures.gersteinlab.org/summary/

* Finally, I’ve done little write up of some highlights, viz:

Highlights for 2015 include a number of technical computational biology papers, discussing such things as structural variant breakpoint analysis, regulatory network characterization in terms of logical circuits, and the identification of recurrent cancer variants. We also participated in some major consortium papers (1000G, PsychENCODE, and TCGA Prostate & Kidney) and had some popular-interest pieces (eg a SF Chronicle op-ed on website regulation). There were a few important lectures (eg keynote at Genome Informatics ’15). Finally, we received new grants such as the renewal of the Yale CMG sequencing center.

(Private link, with authentication only for my reference:
http://facultyadmin.yale.edu/far/mark-gerstein)

DeconRNASeq…framework for #deconvolution of heterogeneous tissue samples http://bioinformatics.oxfordjournals.org/content/29/8/1083.long “App note” w/ very concise code snippet

30 lines of R?

From MF, in chronological order

1. bioinfo.mbb.yale.edu — physical machine in Bass

2. www.gersteinlab.org — physical machine in ITS
(mirrored to bioinfo.mbb.yale.edu — physical machine in Bass)

3. www.gersteinlab.org — qemu virtualized machine in ITS

4. mirrored to bioinfo.mbb.yale.edu — VMware virtualized machine in Gibbs

5. info.gersteinlab.org forked — VMware virtual machine in Gibbs

6. www.gersteinlab.org/info.gersteinlab.org — consolidated in EC2