Posts Tagged ‘lab’

West campus storage closet

Sunday, August 19th, 2018

MS surface 2

Friday, May 18th, 2018
note taking to a whole different level

IvyPlus Exchange Program + Imperial, UCL and U of London

Friday, May 11th, 2018

a link to details on IvyPlus exchange program:

turns out Imperial College London is the institution that left U of London. UCL is still part of U of London

The RedMonk Programming Language Rankings: June 2016 – tecosystems

Sunday, August 7th, 2016

.@RedMonk Programming Language Rankings Now in a period of little change after an initial “Cambrian” diversification

Gerstein Lab Highlights in 2015

Sunday, January 31st, 2016

I recently had to complete my 2015 Faculty Activity Report (FAR), summarizing key lab “activities” of last year. (Sounds a bit like summer camp.)

Here are some excerpts:

* A full updated CV describing my lab’s activities (in too much detail):

* This is mostly based on compiling the people in the lab in ’15 & the papers they’ve worked on :

There’s also an update on lectures in ’15:

* Finally, I’ve done little write up of some highlights, viz:

Highlights for 2015 include a number of technical computational biology papers, discussing such things as structural variant breakpoint analysis, regulatory network characterization in terms of logical circuits, and the identification of recurrent cancer variants. We also participated in some major consortium papers (1000G, PsychENCODE, and TCGA Prostate & Kidney) and had some popular-interest pieces (eg a SF Chronicle op-ed on website regulation). There were a few important lectures (eg keynote at Genome Informatics ’15). Finally, we received new grants such as the renewal of the Yale CMG sequencing center.

(Private link, with authentication only for my reference:

DeconRNASeq: a statistical framework for deconvolution of heterogeneous tissue samples based on mRNA-Seq data

Friday, August 28th, 2015

DeconRNASeq…framework for #deconvolution of heterogeneous tissue samples “App note” w/ very concise code snippet

30 lines of R?

Brief history of

Saturday, June 15th, 2013

From MF, in chronological order

1. — physical machine in Bass

2. — physical machine in ITS
(mirrored to — physical machine in Bass)

3. — qemu virtualized machine in ITS

4. mirrored to — VMware virtualized machine in Gibbs

5. forked — VMware virtual machine in Gibbs

6. — consolidated in EC2