Sunday, April 3rd, 2016
Discovering TFBSs in…Repetitive Regions of #Genomes with Multi-Read
Analysis http://journals.PLOS.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002111 CSEM uses EM to refine site occupancy
Chung D, Kuan PF, Li B, SanalKumar R, Liang K, Bresnick E, Dewey C, and Keles S (2011), “Discovering transcription factor binding sites in highly repetitive regions of genomes with multi-read analysis of ChIP-Seq data,” PLoS Computational Biology, 7(7): e1002111
http://www.stat.wisc.edu/~keles/Software/multi-reads/
CSEM
https://toolshed.g2.bx.psu.edu/repository/display_tool?repository_id=e18c78b20646a2aa&tool_config=database%2Fcommunity_files%2F000%2Frepo_83%2Fcsem.xml&changeset_revision=1438767ad92f
Posted in SciLit, Uncategorized | Tags: chipseq, genome, jclub, mtg, multiread | No Comments »
Saturday, January 4th, 2014
Posted in SciLit, Uncategorized | Tags: bioinformatics, dataset, ek, from, genome, ngs, to, Venter, yhl | No Comments »
Saturday, January 4th, 2014
QT:{{”
To demonstrate the promise of personalized genome analysis, the genome of HuRef was sequenced using the Life SOLiD™ platform. Nimbus Informatics performed the analytical work for this project and has made the resulting data available here, running entirely on the Amazon Cloud.
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http://huref.nimbusinformatics.com
Posted in -, Uncategorized | Tags: bioinformatics, dataset, from, genome, jc, ngs, to, Venter, yhl | No Comments »