Archive for the ‘SciLit’ Category

Single Cell Analysis paper

Saturday, October 8th, 2016

16 Neuronal subtypes & [inter-regional] diversity revealed by [#singlecell]-nucleus RNAseq of…the brain
http://science.sciencemag.org/content/352/6293/1586.long

Neuronal subtypes and diversity revealed by single-nucleus RNA sequencing of the human brain.
Lake BB, Ai R, Kaeser GE, Salathia NS, Yung YC, Liu R, Wildberg A, Gao D, Fung HL, Chen S, Vijayaraghavan R, Wong J, Chen A, Sheng X, Kaper F, Shen R, Ronaghi M, Fan JB, Wang W, Chun J, Zhang K.
Science. 2016 Jun 24;352(6293):1586-90. doi: 10.1126/science.aaf1204.

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets — ScienceDi rect

Tuesday, October 4th, 2016

Gray cites Parallel Genome-wide Expression Profiling of Indiv. Cells
w. nL Droplets http://www.sciencedirect.com/science/article/pii/S0092867415005498 … Drop-seq via barcodes #ngsus16

Multi-Input RNAi-Based Logic Circuit for Identification of Specific Cancer Cells | Science

Tuesday, October 4th, 2016

Weiss cites RNAi-Based Logic Circuit for Identification of…Cancer Cells http://science.sciencemag.org/content/333/6047/1307 How to optimize via adding FFLs #NGSUS16

adding in FFL & FBL to get more selectivity

Integrated Systems Approach Identifies Genetic Nodes and Networks in Late-Onset Alzheimer’s Disease: Cell

Saturday, October 1st, 2016

Zhang, Bin, Chris Gaiteri, Liviu-Gabriel Bodea, Zhi Wang, Joshua McElwee, Alexei A. Podtelezhnikov, Chunsheng Zhang et al. "Integrated systems approach identifies genetic nodes and networks in late-onset Alzheimer’s disease." Cell 153, no. 3 (2013): 707-720.

Integrated systems approach identifies genetic…#networks in…Alzheimer’s http://www.Cell.com/cell/abstract/S0092-8674(13)00387-5 Determining causality from co-expression

Elucidating Molecular Motion through Structural and Dynamic Filters of Energy-Minimized Conformer Ensembles

Friday, September 30th, 2016

Elucidating Molecular Motion (compatible w. #NMR relaxation times) through…Filters of Energy-Minimized…Ensembles
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3983377

PLOS ONE: Sizing the Problem of Improving Discovery and Access to NIH-Funded Data: A Preliminary Study

Thursday, September 29th, 2016

http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0132735

High-throughput discovery of novel developmental phenotypes : Nature : Nature Research

Thursday, September 22nd, 2016

HTP discovery of novel developmental #phenotypes
http://www.nature.com/nature/journal/v537/n7621/full/nature19356.html New list of essential genes for the mouse, upping number to ~2900

Mutational landscape determines sensitivity to PD-1 blockade in non–small cell lung cancer | Science

Monday, September 19th, 2016

high mutational burden predicts responsive patients

http://science.sciencemag.org/content/348/6230/124.long

Inferring regulatory element landscapes and transcription factor networks from cancer methylomes | Genome Biology | Full Text

Monday, September 19th, 2016

ELMER

https://genomebiology.biomedcentral.com/articles/10.1186/s13059-015-0668-3

The Path to Cancer — Three Strikes and You’re Out — NEJM

Sunday, September 18th, 2016

http://www.nejm.org/doi/full/10.1056/NEJMp1508811