Archive for the ‘SciLit’ Category
SEQSpark: A Complete Analysis Tool for Large-Scale Rare Variant Association Studies Using Whole-Genome and Exome Sequence Data: The American Journal of Human Genetics
Sunday, November 5th, 2017http://www.cell.com/ajhg/fulltext/S0002-9297(17)30235-5
Cell-free DNA Comprises an In Vivo Nucleosome Footprint that Informs Its Tissues-Of-Origin. – PubMed – NCBI
Sunday, November 5th, 2017CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data | Genome Biology | Full Text
Sunday, November 5th, 2017Obesity-associated variants within FTO form long-range functional connections with IRX3
Sunday, November 5th, 2017Comparative analysis of three-dimensional chromosomal architecture identifies a novel fetal hemoglobin regulatory element. – PubMed – NCBI
Tuesday, October 31st, 2017Comparative…3D chromosomal architecture identifies a novel fetal Hb reg. element http://GenesDev.cshlp.org/content/31/16/1704.abstract #Pseudogene shifts v. promotor
Visualizing the molecular sociology at the HeLa cell nuclear periphery | Science
Friday, October 27th, 2017http://science.sciencemag.org/content/351/6276/969.long
#Visualizing the molecular sociology [of complexes] at the HeLa cell nuclear periphery, w/ #CryoET at 10 Ang. res. http://science.ScienceMag.org/content/351/6276/969.long
Science. 2016 Feb 26;351(6276):969-72. doi: 10.1126/science.aad8857.
Visualizing the molecular sociology at the HeLa cell nuclear periphery.
Mahamid J1, Pfeffer S2, Schaffer M2, Villa E3, Danev R2, Cuellar LK2, Förster F2, Hyman AA4, Plitzko JM2, Baumeister W1.
GTEx paper
Monday, October 23rd, 2017Paper about what will be on eGTEx project:
https://www.nature.com/ng/journal/vaop/ncurrent/full/ng.3969.html
Gtex Nature
https://www.nature.com/nature/journal/v550/n7675/full/nature24267.html https://www.nature.com/nature/journal/v550/n7675/full/nature24265.html https://www.nature.com/nature/journal/v550/n7675/full/nature24041.html http://www.nature.com/nature/journal/v550/n7675/full/nature24277.html
German activities on RNA privacy
Saturday, October 21st, 2017http://www.mhumbert.com/publications/oakland17.pdf
Identifying Personal DNA Methylation Profiles by Genotype Inference
Michael Backes⇤, Pascal Berrang⇤, Matthias Bieg†, Roland Eils†‡, Carl Herrmann†‡, Mathias Humbert⇤, Irina Lehmann§
Re-Identification of Individuals in Genomic Data-Sharing Beacons via Allele Inference | bioRxiv
Saturday, October 21st, 2017https://www.biorxiv.org/content/early/2017/10/09/200147
higher order markov to predict snps