Posts Tagged ‘privacy’

Microbiome Fingerprints | The Scientist Magazine(R)

Sunday, May 17th, 2015

http://www.the-scientist.com/?articles.view/articleNo/42950/title/Microbiome-Fingerprints/

QT:{{”

As microbiome signatures mature, law enforcement or intelligence agents could theoretically track people by looking for traces of them left in the microbes they shed. Mark Gerstein, who studies biomedical informatics at Yale University and was not involved in the new study, suggested, for instance, that one could imagine tracking a terrorist’s movements through caves using their microbiome signature.

Huttenhower and his colleagues were identifying individuals out of pools of just hundreds of project participants, however. It is currently unclear how well the algorithm will perform when applied to the general population, though the researchers estimate that their code could likely pick someone out from a group of 500 to 1,000. “I would expect that number to get bigger in the future as we get more data and better data and better coding strategies,” Huttenhower said.

But the work raises privacy concerns similar to those faced by scientists gather human genomic data. Microbiome researchers are already wary of the human genomic DNA that gets caught up in microbiome sequences, but it increasingly appears that the microbiome sequences themselves are quite personal.

In the genomics field, researchers have increasingly limited access to databases containing human genomic sequencing data. Researchers must apply to use these data. “People might increasingly want to put the microbiome data under the same type of protection that they put normal genomic variants under,” said Gerstein. “Your microbiome is associated with various disease risks and proclivities for X and Y. I don’t think it’s a completely neutral identification. It potentially says things about you.”

“}}

Identifying personal microbiomes using metagenomic codes

Sunday, May 17th, 2015

Identifying personal microbiomes using metagenomic codes
http://www.pnas.org/content/early/2015/05/08/1423854112.abstract Pot. tracking & #privacy implications
http://www.the-scientist.com/?articles.view/articleNo/42950/title/Microbiome-Fingerprints

http://www.pnas.org/content/early/2015/05/08/1423854112.abstract

doi: 10.1073/pnas.1423854112

Identifying personal microbiomes using metagenomic codes

Eric A. Franzosa
Katherine Huang
James F. Meadow
Dirk Gevers
Katherine P. Lemond
Brendan J. M. Bohannanc
Curtis Huttenhower

Longitudinal analysis of microbial interaction between humans and the indoor environment

Sunday, May 3rd, 2015

Microbial interaction betw humans & the indoor environment http://www.sciencemag.org/content/345/6200/1048.abstract
Unique personal signatures w/ implications for #forensics

Places change to conform to signature…..

Summarizing 4 conferences last week: AACR ’15, ISEV ’15, BioIT ’15 & ICEBEM 2015

Tuesday, April 28th, 2015

AACR 2015
http://www.aacr.org/Meetings/Pages/MeetingDetail.aspx?EventItemID=25#.VT8JXa1Viko http://linkstream2.gerstein.info/tag/i0pcawg15/

ISEV/ERCC Education Day – ISEV – International Society for
Extracellular Vesicles
http://www.isevmeeting.org/isevercc-education-day.html
http://linkstream2.gerstein.info/tag/i0isev/

2015 Bio-IT World Conference & Expo
http://www.bio-itworldexpo.com/
http://linkstream2.gerstein.info/tag/i0bioit15/
http://lectures.gersteinlab.org/summary/Progressive-summarization-large-scale-data-interpret-cancer–20150423-i0bioIT15/

8th International Conference on Ethics in Biology, Engineering & Medicine (ICEBEM 2015)
http://www.downstate.edu/orthopaedics/bioethics/
http://lectures.gersteinlab.org/summary/Soc-n-Tech-Soln-to-Privacy-in-Personal-Genomics–20150424-i0icebem15/

Tweets for all of them
https://storify.com/markgerstein/favorite-tweets-from-bioit-15-aacr-15-and-isev-15-16

truecrypt fork

Tuesday, March 24th, 2015

https://veracrypt.codeplex.com/

Quantum internet could keep us safe from spying eyes – tech – 18 September 2014 – New Scientist

Sunday, March 15th, 2015

#Quantum internet could keep us safe from spying eyes http://www.newscientist.com/article/mg22329873.000-quantum-internet-could-keep-us-safe-from-spying-eyes.html#.VQOzLBDF87M Uses photon states for intercept-proof key distribution (#QKD)

QT:{{"
That something is called quantum key distribution (QKD). The technique
transmits photons in particular quantum states to generate a secure
cryptographic key, with which you can encrypt data sent over an
ordinary, non-quantum connection. QKD is far more secure than standard
cryptography, which relies on hard mathematical problems that can
theoretically be cracked, given enough computing power. Any attempt to
intercept a quantum key, however, will disturb the photon’s quantum
states, alerting users not to use the key (see "Unbeatable security")."}}

The Secret Life of Passwords – NYTimes.com

Sunday, March 8th, 2015

Secret life of passwords http://www.nytimes.com/2014/11/19/magazine/the-secret-life-of-passwords.html Our habit to use one secret to encode another & how this was helpful in the aftermath of 911

Private Link by bitly

Wednesday, March 4th, 2015

http://blog.bitly.com/post/31527664770/public-and-private-whats-the-difference

Privacy in Pharmacogenetics: An End-to-End Case Study of Personalized Warfarin Dosing | USENIX

Friday, February 20th, 2015

Privacy in Pharmacogenetics…Personalized Warfarin Dosing
https://www.usenix.org/conference/usenixsecurity14/technical-sessions/presentation/fredrikson_matthew Model-inversion attack; differential privacy doesn’t help

Authors:
Matthew Fredrikson, Eric Lantz, and Somesh Jha, University of Wisconsin—Madison; Simon Lin, Marshfield Clinic Research Foundation; David Page and Thomas Ristenpart, University of Wisconsin—Madison

Awarded Best Paper!

My Childhood Memories Are Locked in a Yahoo Account

Sunday, February 1st, 2015

My Childhood Memories Are Locked in a Yahoo Account http://www.theatlantic.com/technology/archive/2014/06/i-asked-the-internet-to-guess-the-answers-to-my-security-questions/373223 Nice example illustrating difficult tradeoffs in #datasecurity