Posts Tagged ‘i0flg’
June in transit: Summarizing a number of recent meetings including #genomicsfest & #icsg2015
Saturday, June 27th, 2015Spent a lot of June going to meetings, incl.
PCAWG Santa Cruz
ICSG2015 (with a sub-visit to Tel Aviv)
Festival of Genomics
RNA-Seq 2015 Boston
“Crowd-sourced” notebook of favorite tweets:
https://storify.com/markgerstein/favorite-tweets-from-june-conferences-incl-festiva
My tagged posts, mostly links to papers:
http://linkstream2.gerstein.info/tag/i0flg/
http://linkstream2.gerstein.info/tag/i0isgc/
http://linkstream2.gerstein.info/tag/i0rnaseq15/
http://linkstream2.gerstein.info/tag/i0pcawgsc/
Lectures I gave:
http://lectures.gersteinlab.org/summary/Comparing-Transcriptomes-of-Distant-Org–20150610-i0isgc-tau/
the rise of a digital immune system schatz – Google Search
Saturday, June 27th, 2015A Digital Immune System by @mike_schatz
http://www.gigasciencejournal.com/content/1/1/4Next, microbes sensing environmental chemicals
(http://papers.gersteinlab.org/papers/metagenomics)?
Comprehensive transcriptome analysis using synthetic long-read sequencing reveals molecular co-association of distant splicing events : Nature Biotechnology : Nature Publishing Group
Thursday, June 25th, 2015#Transcriptome analysis [focusing on brain tissue]
using…long-read[s]…reveals…co-association of
distant…exonshttp://www.nature.com/nbt/journal/vaop/ncurrent/abs/nbt.3242.html
Mostly protein coding genes
Defining a personal, allele-specific, and single-molecule long-read transcriptome
Thursday, June 25th, 2015Assembling large genomes with single-molecule sequencing and locality-sensitive hashing : Nature Biotechnology : Nature Publishing Group
Thursday, June 25th, 2015Clan Genomics and the Complex Architecture of Human Disease: Cell
Thursday, June 25th, 2015http://www.cell.com/cell/abstract/S0092-8674(11)01062-2?_returnURL=http%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0092867411010622%3Fshowall%3Dtrue
BMC Genomics | Full text | PacBio-LITS: a large-insert targeted sequencing method for characterization of human disease-associated chromosomal structural variations
Thursday, June 25th, 2015PacBio-LITS: a…targeted sequencing method for characterization of…disease-associated SVs
http://www.biomedcentral.com/1471-2164/16/214 Capture reagent+@PacBio
Sequencing and analysis of genomic fragments from the NF1 locus. – PubMed – NCBI
Thursday, June 25th, 2015publication containing both F Collins & JC Venter!
Genome evolution during progression to breast cancer
Thursday, June 25th, 2015http://genome.cshlp.org/content/23/7/1097.long
Daniel E. Newburger1,6,
Dorna Kashef-Haghighi2,6,
Ziming Weng3,6,
Raheleh Salari2,
Robert T. Sweeney3,
Alayne L. Brunner3,
Shirley X. Zhu3,
Xiangqian Guo3,
Sushama Varma3,
Megan L. Troxell4,
Robert B. West3,7,
Serafim Batzoglou2,7 and
Arend Sidow3,5,7
Published in Advance April 8, 2013, doi:10.1101/gr.151670.112 Genome Res. 2013. 23:1097-1108