Posts Tagged ‘from’

My Spiroo Can Tell Your Doctor When You’re Out Of Breath | TechCrunch

Sunday, December 28th, 2014

works with iphone but doesn’t appear to available as of Dec-2014

http://www.myspiroo.com/
http://techcrunch.com/2014/04/04/my-spiroo-can-tell-your-doctor-when-youre-out-of-breath/

Human Genetics Shape the Gut Microbiome: Cell

Friday, December 19th, 2014

Human Genetics Shape the Gut #Microbiome
http://www.cell.com/abstract/S0092-8674%2814%2901241-0 A particular family of firmicutes is highly heritable & correlated w/ BMI

Goodrich, J.K., Waters, J.L., Poole, A.C., Sutter, J.L., Koren, O., Blekhman, R., Beaumont, M., Van Treuren, W., Knight, R., Bell, J.T., et al. (2014). Human Genetics Shape the Gut Microbiome. Cell 159, 789–799.

hi-C for 9 cell types

Tuesday, December 16th, 2014

A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of #Chromatin Looping
http://www.cell.com/cell/abstract/S0092-8674(14)01497-4 HiC data for 9 celltypes

A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping

Suhas S.P. Rao
,Miriam H. Huntley
Neva C. Durand
Elena K. Stamenova
Ivan D. Bochkov
James T. Robinson
Adrian L. Sanborn
Ido Machol
Arina D. Omer
Eric S. Lander
Erez Lieberman Aiden

DOI: http://dx.doi.org/10.1016/j.cell.2014.11.021

http://www.cell.com/cell/abstract/S0092-8674(14)01497-4

interesting article

Monday, December 15th, 2014

Bioinformatics. Sep 15, 2013; 29(18): 2223–2230.
Published online Jul 9, 2013. doi: 10.1093/bioinformatics/btt375 PMCID: PMC3753564

A comparative analysis of algorithms for somatic SNV detection in cancer

twin ASEs

Monday, December 15th, 2014

http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.3162.html

Gene-gene and gene-environment interactions detected by transcriptome sequence analysis in twins

Alfonso Buil,
Andrew Anand Brown,
Tuuli Lappalainen,
Ana Viñuela,
Matthew N Davies,
Hou-Feng Zheng,
J Brent Richards,
Daniel Glass,
Kerrin S Small,
Richard Durbin,
Timothy D Spector
& Emmanouil T Dermitzakis

hi-C for 9 cell types

Sunday, December 14th, 2014

A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping

Suhas S.P. Rao
,Miriam H. Huntley
Neva C. Durand
Elena K. Stamenova
Ivan D. Bochkov
James T. Robinson
Adrian L. Sanborn
Ido Machol
Arina D. Omer
Eric S. Lander
Erez Lieberman Aiden

DOI: http://dx.doi.org/10.1016/j.cell.2014.11.021

http://www.cell.com/cell/abstract/S0092-8674(14)01497-4

A load driver device for engineering modularity in biological networks : Nature Biotechnology : Nature Publishing Group

Tuesday, December 9th, 2014

A load driver device for engineering modularity in…#networks http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.3044.html Allows joining components w/o downstream retroactivity

NIH Common Fund Initiatives (high level)

Monday, November 24th, 2014

Nice overview of the programs

http://commonfund.nih.gov/initiativeslist

CRE-Seq paper…

Monday, November 24th, 2014

High-throughput functional testing of ENCODE segmentation
predictionsGenome Res. October 2014 24: 1595-1602; Published in Advance July 17, 2014,

that can be used for training predicted enhancers

http://genome.cshlp.org/content/24/10/1595.full.pdf

A case study for cloud based high throughput analysis of NGS data using the globus genomics system

Friday, November 21st, 2014

http://www.sciencedirect.com/science/article/pii/S2001037014000427