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Posts Tagged ‘encode’

Massively parallel in vivo enhancer assay reveals that highly local features determine the cis-regulatory function of ChIP-seq peaks

Thursday, July 18th, 2013

http://www.pnas.org/content/110/29/11952

Posted in SciLit, Uncategorized | Tags: encode | No Comments »

Data Sharing, Embargo, and Big Science | MassGenomics

Saturday, June 29th, 2013

An interesting blog post on data release by consortia including ENCODE. http://massgenomics.org/2013/06/data-sharing-embargo.html

Posted in -, Uncategorized | Tags: encode, epublishing | No Comments »

Paper Integrative analysis of C. elegans modENCODE ChIP-seq data sets to infer gene regulatory interactions

Saturday, June 29th, 2013

Genome Research
http://genome.cshlp.org/content/23/6/941.full?rss=1
Appears to use much of the existing modencode data

Posted in SciLit, Uncategorized | Tags: encode, modencode | No Comments »

BioTechniques – Up In The Sky! It’s Super-Enhancers

Monday, June 17th, 2013

http://www.biotechniques.com/news/Up-In-The-Sky-Its-Super-Enhancers/biotechniques-343598.html#.Ub59JPaG1A9

Posted in Uncategorized, x78qt | Tags: encode, enhancers, x78notcore | No Comments »

Comment on “Evidence of Abundant Purifying Selection in Humans for Recently Acquired Regulatory Functions ”

Saturday, May 18th, 2013

http://www.sciencemag.org/content/340/6133/682.1.full

Posted in SciLit, Uncategorized | Tags: #genomics, 1000g, encode, fig | No Comments »

Flesh-Eating Plant Cleaned Junk From Its Minimalist Genome – Phenomena: Not Exactly Rocket Science

Monday, May 13th, 2013

http://phenomena.nationalgeographic.com/2013/05/12/flesh-eating-plant-cleaned-junk-minimalist-genome/

Posted in PopSci, Uncategorized | Tags: encode, junkdna | No Comments »

On the immortality of television sets: “function” in the human genome according to the evolution-free g ospel of ENCODE

Sunday, March 3rd, 2013

http://gbe.oxfordjournals.org/content/early/2013/02/20/gbe.evt028.abstract http://www.ncbi.nlm.nih.gov/pubmed/23431001

Posted in SciLit, Uncategorized | Tags: critcmptxn, encode | No Comments »

Mike’s Fourth Try: My thoughts on the immortality of television sets

Saturday, March 2nd, 2013

http://blog.mlin.net/2013/02/my-thoughts-on-immortality-of.html

Posted in -, Uncategorized | Tags: critcmptxn, encode | No Comments »

Comment on “Evidence of Abundant and Purifying Selection in Humans for Recently Acquired Regulatory Functions ”

Saturday, March 2nd, 2013

http://arxiv.org/ftp/arxiv/papers/1212/1212.3076.pdf

Posted in SciLit, Uncategorized | Tags: critcmptxn, encode | No Comments »

The ENCODE Controversy And Professionalism In Science | The Next Regeneration

Saturday, March 2nd, 2013

http://www.scilogs.com/next_regeneration/the-encode-controversy-and-professionalism-in-science/

Posted in -, Uncategorized | Tags: critcmptxn, encode | No Comments »