Posts Tagged ‘dw’

Publication delays at PLOS and 3,475 other journals

Monday, July 6th, 2015

#Publication delays at PLOS & 3,475 other[s] by @dhimmel http://blog.dhimmel.com/plos-and-publishing-delays Perhaps journals should provide on-time stats as airlines do

Similarity network fusion for aggregating data types on a genomic scale : Nature Methods : Nature Publishing Group

Monday, June 1st, 2015

Similarity #network fusion for aggregating data types http://www.nature.com/nmeth/journal/v11/n3/full/nmeth.2810.html Combines mRNA, miRNA & gene fusions to classify cancer subtypes
http://compbio.cs.toronto.edu/SNF/SNF

markov logic network from KDD 2014, might be good for netessay

Sunday, August 31st, 2014

[[DW: very large-scale models (vs. VLSI): markov logic network on customer networks, Innovation Award Talk by Pedro Domingos, KDD 2014 ]]

http://homes.cs.washington.edu/~pedrod/803

also, it has biological applications like:
Markov Logic Networks in the Analysis of Genetic Data
https://www.systemsbiology.org/markov-logic-networks-analysis-genetic-data

Dr Fenyo in NYU Proteomic talks

Sunday, August 31st, 2014

http://www.fenyolab.org/presentations/presentations.html
https://www.youtube.com/watch?v=wviPWfF5bdw

ModMap – Detecting maps of modules in biological networks

Thursday, July 17th, 2014

http://acgt.cs.tau.ac.il/modmap/

paper on cancer driver genes in RECOMB 2014

Sunday, April 6th, 2014

paper from RECOMB 2014 might be interesting to you, which uses
hitting time in random walk to identify cancer drivers.

http://link.springer.com/chapter/10.1007%2F978-3-319-05269-4_23

HIT.nDRIVE: Multi-Driver Gene Prioritization based on Hitting Time

Raunak Shrestha, Ermin Hodzic, Jake Yeung, Kendric Wang, Thomas
Sauerwald, Phuong Dao, Shawn Anderson, Himisha Beltran, Mark A. Rubin,
Colin Collins, Gholamreza Haffari and S. Cenk Sahinalp.

WildCat

Saturday, October 12th, 2013

http://youtu.be/wE3fmFTtP9g