Archive for the ‘x78qt’ Category

ScienceDirect.com – Chemistry & Biology – As Personal Genomes Join Big Data Will Privacy and Access Shrink?

Monday, March 4th, 2013

http://www.sciencedirect.com/science/article/pii/S1074552113000094

Volume 20, Issue 1, 24 January 2013, Pages 1–2
As Personal Genomes Join Big Data Will Privacy and Access Shrink? Jeanne Erdmann
Chemistry & Biology

QT:{

We live immersed in a world of big data. Every Internet click is tracked and noted—where we browse, what we view, how long we browse, where we shop, what we buy, what we “like.” In fact, many of our daily activities are monitored. Surveillance cameras track vehicles as they pass through intersections and track pedestrians as they walk down sidewalks; cameras note our transactions at ATMs. While it’s understandable to worry that so much surveillance invades our privacy, we may be overlooking the most personal information of all: the order of base pairs in our genomes. Each day, DNA sequencers worldwide churn out personal genomic data, which are then folded into large databases, some of which are open access, others of which are privately held. All of these big data collections carry value, and they’re mined for that value, whether it’s to tell Amazon what kind of books we like or to tell researchers whether our DNA carries variations that link to an increased risk for disease.
“I do think that those are parallel discussions,” says Mark Gerstein, PhD, a professor of bioinformatics at Yale University in New Haven. “But if you talk to most genomicists they don’t usually connect genomics with large-scale data mining on the web or in life.” They’re the same, Gerstein says. People may be attuned to the concept of secrets and privacy of personal information but not when it comes to mining terabytes of personal genomic information. The distinction is critical, because our tastes in books and music may evolve over the years, but our genomes never change.

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Big biology: The ’omes puzzle : Nature News & Comment

Friday, March 1st, 2013

http://www.nature.com/news/big-biology-the-omes-puzzle-1.12484?WT.ec_id=NATURE-20130228
Where once there was the genome, now there are thousands of ’omes.
Nature goes in search of the ones that matter.
by Monya Baker
27 February 2013Contains an interesting ‘omes crossword

Junk no more > Features > Winter 2013 | Yale Medicine

Thursday, February 28th, 2013

http://yalemedicine.yale.edu/winter2013//features/feature/145468 Yale scientists played a leading role in an international effort to map the 99 percent of the human genome that doesn’t produce
proteins—perhaps ending the notion that those regions are “junk.” By Colleen Shaddox

Big biology: The ’omes puzzle : Nature News & Comment

Thursday, February 28th, 2013

http://www.nature.com/news/big-biology-the-omes-puzzle-1.12484?WT.ec_id=NATURE-20130228 Where once there was the genome, now there are thousands of ’omes. Nature goes in search of the ones that matter.
by Monya Baker
27 February 2013

A Chronological Atlas of Human Brain Development is Coming | New York Genome Center

Thursday, February 14th, 2013

http://nygenome.org/blog/chronological-atlas-human-brain-development-coming

It Started With ‘Genome’ – ‘Omes’ Proliferate in Science – NYTimes.com

Sunday, November 11th, 2012

http://www.nytimes.com/2012/05/04/science/it-started-with-genome-omes-proliferate-in-science.html

YaleNews | Lessons from 1000 Genomes: Small differences matter

Friday, November 2nd, 2012

http://news.yale.edu/2012/10/31/lessons-1000-genomes-small-differences-matter

Far From ‘Junk,’ DNA Dark Matter Proves Crucial to Health – NYTimes.com

Sunday, September 30th, 2012

http://www.nytimes.com/2012/09/06/science/far-from-junk-dna-dark-matter-proves-crucial-to-health.html

ENCODE DNA Data Project, Inspired and Built By Linux | Linux.com

Sunday, September 23rd, 2012

https://www.linux.com/news/featured-blogs/200-libby-clark/636766-encode-dna-data-project-inspired-and-built-by-linux Refers to callgraph paper

Researchers Create ‘Google Maps’ for Human Genome : Science/Tech : Medical Daily

Sunday, September 23rd, 2012

http://www.medicaldaily.com/articles/11935/20120905/researchers-create-google-maps-human-genome.htm Occupy quote reappears !