The Sboner et al. “cost of sequencing” graphs
(http://papers.gersteinlab.org/papers/costseq) have been cited frequently in the biotech industry. Here are a few examples :
This GE Health Care lecture (no direct cite)
https://www.youtube.com/watch?v=NNeKaSQKiM8 at ~13:30
This white paper by EMC:
http://www.emc.com/collateral/white-papers/h10642-cost-per-base-wp.pdf
Human & mouse [mRNA] #methylomes revealed by m6A-seq http://www.nature.com/nature/journal/v485/n7397/full/nature11112.html Conservation across species & conditions (for most sites)
Dan Dominissini,
Sharon Moshitch-Moshkovitz,
Schraga Schwartz,
…
Rotem Sorek
& Gideon Rechavi
Nature 485, 201–206 (10 May 2012) doi:10.1038/nature11112
Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators http://www.nature.com/nature/journal/v508/n7497/full/nature13206.html Reconstructed #evolution across 8 species
Daniel W. Bellott,
Jennifer F. Hughes,
…
Richard A. Gibbs,
Richard K. Wilson
& David C. Page
Nature 508, 494–499 (24 April 2014) doi:10.1038/nature13206
Spacetime wiring specificity supports…selectivity in the retina http://www.nature.com/nature/journal/v509/n7500/full/nature13240.html @eye_wire citizenscience traces neural connectivity
finds a time lag circuit
Jinseop S. Kim,
Matthew J. Greene,
…
H. Sebastian Seung
& the EyeWirers
Nature 509, 331–336 (15 May 2014) doi:10.1038/nature13240
High-res mapping reveals a conserved…mRNA methylation program http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3956118/ Predicting methyl sites w/ seq., structure & position
Cell. 2013 Dec 5; 155(6): 1409–1421.
Published online 2013 Nov 21. doi: 10.1016/j.cell.2013.10.047 PMCID: PMC3956118
NIHMSID: NIHMS550466
High-resolution mapping reveals a conserved, widespread, dynamic meiotically regulated mRNA methylation program
Schraga Schwartz,1,* Sudeep D. Agarwala,2,* Maxwell R. Mumbach,1 Marko Jovanovic,1 Philipp Mertins,1 Alexander Shishkin,1 Yuval Tabach,3,4 Tarjei S Mikkelsen,1 Rahul Satija,1 Gary Ruvkun,3,4 Steven A. Carr,1 Eric S. Lander,1,5,6 Gerald R. Fink,1,2,8 and Aviv Regev 1,7,8
Privacy in Pharmacogenetics…Personalized Warfarin Dosing
https://www.usenix.org/conference/usenixsecurity14/technical-sessions/presentation/fredrikson_matthew Model-inversion attack; differential privacy doesn’t help
Authors:
Matthew Fredrikson, Eric Lantz, and Somesh Jha, University of Wisconsin—Madison; Simon Lin, Marshfield Clinic Research Foundation; David Page and Thomas Ristenpart, University of Wisconsin—Madison
Awarded Best Paper!