Archive for July, 2014

Maps of protein structure space reveal a fundamental relationship between protein structure and function

Saturday, July 19th, 2014

Maps of protein structure space reveal a fundamental relationship between protein structure and function
http://www.pnas.org/content/108/30/12301.abstract

Mapping functional transcription factor networks from gene expression data

Saturday, July 19th, 2014

Mapping functional transcription factor networks from gene expression data

NetProphet ref

http://genome.cshlp.org/content/23/8/1319.long

Large-scale reconstruction of 3D structures of human chromosomes from chromosomal contact data

Saturday, July 19th, 2014

Large-scale reconstruction of 3D structures of human chromosomes from chromosomal contact data
http://nar.oxfordjournals.org/content/early/2014/01/24/nar.gkt1411.full

Exploring mechanisms of human disease through structurally resolved protein interactome networks

Saturday, July 19th, 2014

Mol Biosyst. Author manuscript; available in PMC Jul 1, 2014. Published in final edited form as:
Mol Biosyst. Jan 2014; 10(1): 9–17.
doi: 10.1039/c3mb70225a

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4061614/

Three-dimensional reconstruction of protein networks provides insight into human genetic disease : Nature Biotechnology : Nature Publishing Group

Saturday, July 19th, 2014

http://www.nature.com/nbt/journal/v30/n2/full/nbt.2106.html

Dissecting Disease Inheritance Modes in a Three-Dimensional Protein Network Challenges the “Guilt-by-Asso ciation” Principle

Saturday, July 19th, 2014

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3710751/

surprisingly, no positional effects on LOF mutations … significant proportion of truncation alleles give rise to functional products

“guilt by assoc works”

signif. number dom mut give rise to func products

Ending the War on Fat | TIME

Saturday, July 19th, 2014

Cover story @Time: Ending the War on Fat… & Starting one on carbs http://time.com/2863227/ending-the-war-on-fat Commentary @Slate:
http://www.slate.com/articles/health_and_science/medical_examiner/2010/03/end_the_war_on_fat.html #Diet

Slate title: The misguided war on fat may be making us sicker.

enhancer functional test

Saturday, July 19th, 2014

High-throughput functional testing of ENCODE segmentation predictions

http://genome.cshlp.org/content/early/2014/07/17/gr.173518.114.abstract?papetoc

Mirsynergy: detecting synergistic miRNA regul… Bioinformatics. 2014 – PubMed – NCBI

Saturday, July 19th, 2014

Mirsynergy: detecting synergistic #miRNA regulatory modules by… neighborhood expansion
http://www.ncbi.nlm.nih.gov/pubmed/24894504 creates overlapping clusters

Sicaffe

Friday, July 18th, 2014

[[* ’till 7:30 on Su; from 6:30a (mf) & 7a (ss) *]]

wifi orange-cheetah, passwd in x58f

http://www.si-caffe.com
https://delicious.com/mbgmbg/search/sicaffe