Posts Tagged ‘jclub’

Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study : Nature Biotechnology : Nature Publishing Group

Friday, October 10th, 2014

Multiplatform assessment of #transcriptome profiling [w.] RNAseq http://www.nature.com/nbt/journal/v32/n9/full/nbt.2972.html Nice plots showing great effect of poly-A selection

Constructing structural networks of signaling pathways on the proteome scale

Saturday, September 6th, 2014

Structural networks of signaling pathways
http://www.sciencedirect.com/science/article/pii/S0959440X1200070X Prism on IL10 #networks, mapping on Cosmic, disrupting mutations as drivers

Genome-scale functional characterization of Drosophila developmental enhancers in vivo : Nature : Nature Publishing Group

Wednesday, August 13th, 2014

Functional characterization of… developmental #enhancers in vivo: 3.5k of 7.7k tested active in fly embryo stages
http://www.nature.com/nature/journal/v512/n7512/abs/nature13395.html

“An information-theoretic framework for resolving community structure in complex networks.” Proceedings of the National Academy of Sciences

Thursday, June 12th, 2014

Rosvall, Martin, and Carl T. Bergstrom. “An information-theoretic framework for resolving community structure in complex networks.” Proceedings of the National Academy of Sciences 104.18 (2007): 7327-7331.

Info-theoretic framework for… community structure in complex #networks. Compression v modularity, former better?
http://www.pnas.org/content/104/18/7327.short

Massive Genomic Decay in Serratia symbiotica, a Recently Evolved Symbiont of Aphids

Sunday, June 1st, 2014

Massive Genomic Decay in… a Recently Evolved #Symbiont of Aphids. Creation of #pseudogenes in many COG categories
http://gbe.oxfordjournals.org/content/3/195.long

Gaelen R. Burke & Nancy A. Moran