linkstream2 microblog

Characterization of #SVs w. single molecule & hybrid sequencing http://bioinformatics.oxfordjournals.org/content/30/24/3458.abstract Probabilistic read mapping, re-evaluating adjacencies

QT:{{"
We present MultiBreak-SV, an algorithm to detect structural variants
(SVs) from single molecule sequencing data, paired read sequencing
data, or a combination of sequencing data from different platforms.
"}}

http://iobio.io/

https://bitbucket.org/remills/svelter

http://linkstream2.gerstein.info/tag/i01kgsv15/

Viz of datasets

http://iobio.io/

https://bitbucket.org/remills/svelter

predict bkpts & assess

consensus method

http://www.biomedcentral.com/1471-2164/16/286/abstract

QT:{{”
We introduce GASVPro, an algorithm combining both paired read and read depth signals into a probabilistic model that can analyze multiple alignments of reads.
“}}

http://genomebiology.com/2012/13/3/R22

QT:{{”
We present MultiBreak-SV, an algorithm to detect structural variants (SVs) from single molecule sequencing data, paired read sequencing data, or a combination of sequencing data from different platforms. “}}

uses pacbio

http://bioinformatics.oxfordjournals.org/content/30/24/3458.long