Archive for the ‘SciLit’ Category

Cell – Identifying Recent Adaptations in Large-Scale Genomic Data

Saturday, March 9th, 2013

pos. sel. from 1000G phase 1

http://www.cell.com/retrieve/pii/S0092867413000871
Cell, Volume 152, Issue 4, 703-713, 14 February 2013
Copyright © 2013 Elsevier Inc. All rights reserved.
10.1016/j.cell.2013.01.035
Sharon R. Grossman,Kristian G. Andersen,Ilya Shlyakhter,Shervin Tabrizi,Sarah Winnicki,Angela Yen,Daniel J. Park,Dustin
Griesemer,Elinor K. Karlsson,Sunny H. Wong,Moran Cabili,Richard A. Adegbola,Rameshwar N.K. Bamezai,Adrian V.S. Hill,Fredrik O.
Vannberg,John L. Rinn,1000 Genomes Project,Eric S. Lander,Stephen F. Schaffner,Pardis C. Sabeti

A pseudogene long-noncoding-RNA network regulates PTEN transcription and translation in human cells : Nature Structural & Molecular Biology : Nature Publishing Group

Friday, March 8th, 2013

http://www.nature.com/nsmb/journal/vaop/ncurrent/full/nsmb.2516.html

The epidemic of allergy and asthma : Nature

Monday, March 4th, 2013

~15 year old review but still interesting
http://www.nature.com/nature/journal/v402/n6760supp/full/402b002a0.html

Cancer Cell – Epigenetic Abnormalities in Cancer Find a “Home on the Range”

Monday, March 4th, 2013

https://www.cell.com/cancer-cell/abstract/S1535-6108(12)00520-X?switch=standard

examples from paper to application in Kbase

Monday, March 4th, 2013

Here are two examples to transfer research paper to application in Kbase

http://www.kbase.us/for-users/tutorials/prom-service/
http://www.pnas.org/content/107/41/17845.abstract

http://www.kbase.us/developer-zone/api-documentation/phispy-service/ http://www.ncbi.nlm.nih.gov/pubmed/22584627

Database of retrocopied genes

Sunday, March 3rd, 2013

http://bioinformatics.oxfordjournals.org/content/early/2013/03/01/bioinformatics.btt104.full.pdf RCPedia: a database of retrocopied genes
Navarro, F.C.P. and Galante, P.A.F.
Bioinformatics 2013

On the immortality of television sets: “function” in the human genome according to the evolution-free g ospel of ENCODE

Sunday, March 3rd, 2013

http://gbe.oxfordjournals.org/content/early/2013/02/20/gbe.evt028.abstracthttp://www.ncbi.nlm.nih.gov/pubmed/23431001

Complex networks: Degrees of control : Nature : Nature Publishing Group

Sunday, March 3rd, 2013

http://www.nature.com/nature/journal/v473/n7346/full/473158a.html

A War on Obesity, Not the Obese

Sunday, March 3rd, 2013

http://www.sciencemag.org/content/299/5608/856.abstract

Comment on “Evidence of Abundant and Purifying Selection in Humans for Recently Acquired Regulatory Functions ”

Saturday, March 2nd, 2013

http://arxiv.org/ftp/arxiv/papers/1212/1212.3076.pdf