Archive for September, 2015

Introduction to Systems Modeling in Biology MCDB 261 S15

Saturday, September 19th, 2015

http://mcdb261s15.commons.yale.edu/

Single-Cell Genomics Allows Identification of New Cell Types | MIT Technology Review

Friday, September 18th, 2015

http://www.technologyreview.com/news/537416/single-cells-analyzed-at-unprecedented-scale/

Fewer Ebola Cases Go Unreported Than Thought, Study Finds – The New York Times

Friday, September 18th, 2015

http://www.nytimes.com/2014/12/16/science/fewer-ebola-cases-go-unreported-than-thought-study-finds-.html?_r=0

How Could Google’s New Logo Be Only 305 Bytes, While Its Old Logo Is 14,000 Bytes?

Tuesday, September 15th, 2015

How Could $GOOG’s New Logo Be Only ~.3kB, While [Old] Is 14kB? http://gizmodo.com/how-could-googles-new-logo-be-only-305-bytes-while-its-1728793790 A Triumph for San-serif v serif fonts HT @KirkDBorne

What Is a Tree Worth? – The New Yorker

Tuesday, September 15th, 2015

What Is a #Tree Worth?
http://www.newyorker.com/tech/elements/what-is-a-tree-worth Study on Toronto shows 10 more trees/block =+1% in wellness =$10k/person =being 7yrs younger

QT:{{”

“That is the riddle that underlies a new study in the journal Scientific Reports by a team of researchers in the United States, Canada, and Australia, led by the University of Chicago psychology professor Marc Berman. The study compares two large data sets from the city of Toronto, both gathered on a block-by-block level; the first measures the distribution of green space, as determined from satellite imagery and a comprehensive list of all five hundred and thirty thousand trees planted on public land, and the second measures health, as assessed by a detailed survey of ninety-four thousand respondents. After controlling for income, education, and age, Berman and his colleagues showed that an additional ten trees on a given block corresponded to a one-per-cent increase in how healthy nearby residents felt. “To get an equivalent increase with money, you’d have to give each household in that neighborhood ten thousand dollars—or make people seven years younger,” Berman told me.

You can produce an attenuated version of the same effect simply by looking out a window, or (for experimental convenience) at a picture of a nature scene. Over the past few years, Berman and his colleagues have zeroed in on the “low-level” visual characteristics that distinguish natural from built environments. To do this, they broke down images into their visual components: the proportion of straight to curved edges, the hue and saturation of the colors, the entropy (a statistical measure of randomness in pixel intensity), and so on. The view of an arboretum, for instance, tends to have higher color saturation than that of a street corner, indicating that “the colors in nature are more of the ‘purer’ version of those colors,” Berman said. Even when images are scrambled so that there are no recognizable features, like trees or skyscrapers, to betray what they represent, their low-level visual characteristics still predict how much people will like them.”
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Time-lapse: Scintillaris.

Tuesday, September 15th, 2015

Time-lapse: Scintillarishttp://www.slate.com/blogs/bad_astronomy/2015/09/12/time_lapse_scintillaris.html Great #movie showing someone apparently plucking stars out of sky

a book review by Anne Parfitt-Rogers: The Deeper Genome: Why There Is More to the Human Genome than Meets the Eye

Tuesday, September 15th, 2015

http://www.nyjournalofbooks.com/book-review/deeper-genome

Multi-tasking: how to survive in the 21st century – FT.com

Tuesday, September 15th, 2015

Multi-tasking: how to survive in 21C http://www.ft.com/cms/s/2/bbf1f84a-51c2-11e5-8642-453585f2cfcd.html Explains @gtdguy’s plan of closing "open loops" in terms of the Zeigarnik effect

QT:{{"
“The principle behind Getting Things Done is simple: close the open loops. The details can become rather involved but the method is straightforward. For every single commitment you’ve made to yourself or to someone else, write down the very next thing you plan to do. Review your lists of next actions frequently enough to give you confidence that you won’t miss anything.

This method has a cult following, and practical experience suggests that many people find it enormously helpful — including me (see below). Only recently, however, did the psychologists E J Masicampo and Roy Baumeister find some academic evidence to explain why people find relief by using David Allen’s system. Masicampo and Baumeister found that you don’t need to complete a task to banish the Zeigarnik effect. Making a specific plan will do just as well. Write down your next action and you quiet that nagging voice at the back of your head. You are outsourcing your anxiety to a piece of paper.”
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A Dying Young Woman’s Hope in Cryonics and a Future

Tuesday, September 15th, 2015

A Dying Young Woman’s Hope in Cryonics & a Future http://www.nytimes.com/2015/09/13/us/cancer-immortality-cryogenics.html Glioma sufferer opts for $80K Alcor crowdfunded, brain preservation

QT:{{"

“If the $80,000 fee for neuropreservation seemed steep, they learned that about a third of it pays for medical personnel to be on call for death, while another third is placed in a trust for future revival. The investment income from the trust also pays for storage in liquid nitrogen, which is so cold that it can prevent decay in biological tissue for millenniums.

Some of what they found out gave them pause. Alcor’s antifreeze, once pumped through the blood vessels, transitions into a glassy substance before ice can form and do damage. The process, called vitrification, is similar to that used to store sperm, eggs and embryos for fertility treatments. But that glassy substance has been known to crack, likely causing damage of a different kind.

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About That Brain-Freezing Cryonics Story in the New York Times | MIT Technology Review

Tuesday, September 15th, 2015

http://www.technologyreview.com/view/541311/the-false-science-of-cryonics/