Archive for August, 2015

Do You Know What Your Time Is Really Worth? – WSJ

Sunday, August 2nd, 2015

Do You Know What Your Time Is Really Worth? http://www.wsj.com/articles/do-you-know-what-your-time-is-really-worth-1437500727 According to ClearerThinking.org, reading this article cost me >$25

Will Deep Learning take over Machine Learning, make other algorithms obsolete?

Sunday, August 2nd, 2015

http://www.kdnuggets.com/2014/10/deep-learning-make-machine-learning-algorithms-obsolete.html

George Otto Gey – Wikipedia, the free encyclopedia

Sunday, August 2nd, 2015

https://en.wikipedia.org/wiki/George_Otto_Gey

PLOS Genetics: 8.2% of the Human Genome Is Constrained: Variation in Rates of Turnover across Functional Element Classes in the Human Lineage

Sunday, August 2nd, 2015

QT:{{”
While enriched with ENCODE biochemical annotations, much of the short-lived constrained sequences we identify are not detected by models optimized for wider pan-mammalian conservation. Constrained DNase 1 hypersensitivity sites, promoters and untranslated regions have been more evolutionarily stable than long noncoding RNA loci which have turned over especially rapidly. By contrast, protein coding sequence has been highly stable, with an estimated half-life of over a billion years (d1/2 = 2.1–5.0). From extrapolations we estimate that 8.2% (7.1–9.2%) of the human genome is presently subject to negative selection and thus is likely to be functional, while only 2.2% has maintained constraint in both human and mouse since these species diverged.
“}}

http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1004525

Cystic Fibrosis

Sunday, August 2nd, 2015

QT:{{”
Woe to that child which when kissed on the forehead tastes salty. He is bewitched and soon must die. This adage, from northern European folklore, is an early reference to the common genetic disease recognized today as cystic fibrosis. As the saying implies, the disorder once routinely killed children in infancy and is often identifiable by excessive salt in sweat.
“}}

https://www.msu.edu/~luckie/cfarticle.html

Pseudoenzyme – Proteopedia, life in 3D

Sunday, August 2nd, 2015

QT:{{”
Pseudoenzymes are proteins that cannot catalyze chemical reactions despite being clearly related structurally to functioning enzymes. Many enzyme families contain inactive members. For example, a number of human kinases lack at least one of the key amino acids necessary for catalysis of phosphate transfer [1]. Often pseudoenzymes still have biological roles, albeit non-catalytic. Some assist true enzymes in obtaining functional folds, some server as platforms for other proteins to interact, and some are escorts for proteins [2][3]. “}}

http://proteopedia.org/wiki/index.php/Pseudoenzyme

New lives for old: evolution of pseudoenzyme function illustrated by iRhoms : Abstract : Nature Reviews Molecular Cell Biology

Sunday, August 2nd, 2015

– pseudoenzyme

http://www.nature.com/nrm/journal/v13/n8/abs/nrm3392.html

Road Not Taken: The Unrecognized Harm of Excessive Regulation

Sunday, August 2nd, 2015

http://www.forbes.com/sites/davidshaywitz/2012/01/27/care-about-new-medicines-watch-this-video/

Genome-wide identification of pseudogenes capable of disease-causing gene conversion. – PubMed – NCBI

Sunday, August 2nd, 2015

http://www.ncbi.nlm.nih.gov/pubmed/16671097

DrinkMate – it’s Always Got Your BAC!

Sunday, August 2nd, 2015

http://thegadgetflow.com/portfolio/drinkmate/