Archive for June, 2014

A mammalian pseudogene lncRNA at the interface of inflammation and anti-inflammatory therapeutics | eLife

Sunday, June 22nd, 2014

QT:{{”
We identify an lncRNA pseudogene, Lethe (named after the mythological river of forgetfulness, for its role in negative feedback), which is expressed in response to proinflammatory cytokines TNFα and IL-1β, and the anti-inflammatory agent, dexamthasone, but is not responsive to microbial components, and is primarily found on the chromatin. Lethe is regulated by RelA, independent of pseudogene family members and proximal genes. Additionally, Lethe is dramatically downregulated in aged spleen. Finally, Lethe binds directly to RelA to inhibit NF-κB DNA binding activity. These findings suggest that Lethe may function as a novel negative regulator of NF-κB, to help fine tune the inflammatory response.
“}}

A mammalian #pseudogene #lncRNA at the interface of inflammation… Lethe may down-regulate NF-kB via binding to RelA
http://elifesciences.org/content/2/e00762

No use of Gencode pgenes !

Admission and opening times at Tate Modern | Tate

Sunday, June 22nd, 2014

http://www.tate.org.uk/visit/tate-modern/admission-opening-times Opening times
10.00–18.00, Sunday – Thursday

Amazon’s Phone: It’s Not About the Phone, Really – NYTimes.com

Sunday, June 22nd, 2014

http://www.nytimes.com/2014/06/19/upshot/amazons-phone-its-not-about-the-phone-really.html?smid=tw-nytimes&_r=0

Manhattanhenge

Saturday, June 21st, 2014

7/11 = manhattanhenge
http://www.amnh.org/calendar/manhattanhenge

Tiktaalik – Wikipedia, the free encyclopedia

Saturday, June 21st, 2014

http://en.wikipedia.org/wiki/Tiktaalik

Compare: How London Looks on Google vs. Paintings From the 1700s | Wired Design | Wired.com

Saturday, June 21st, 2014

How #London Looks on $GOOG v #Paintings From the 1700s: Not too different! Fun to see this timetravel on a real visit
http://www.wired.com/design/2014/03/stunning-comparison-london-using-google-street-view-centuries-old-paintings

The ten images include a few central London, including:
Westminster Abbey, 2 near Trafalgar Sq, Covent Garden Market, the Strand & Bank Jct (coordinates 51.513433°N 0.089045°W)

Other similar write-ups:
http://www.theguardian.com/cities/gallery/2014/feb/25/london-paintings-google-street-view-canaletto-1 http://www.businessinsider.com/modern-london-with-historic-paintings-2014-2 http://imgur.com/a/jdIM0

Also, from @geocodedArt :
Paintings matched to location, w/StreetView: FR, UK, IT,
US DE NL http://goo.gl/2D97Jm . Or w/mobile http://goo.gl/oRZpQw

RNAseq alignment and mapping

Friday, June 20th, 2014

The TCGA consortium has set up a test of aligner (10
aligners)/quantification (5 methods) sensitivity for RNA-seq quantification. The combinations they tried are available as a virtual machine at:

https://code.google.com/p/irap

Vermeer’s paintings might be 350 year-old color photographs – Boing Boing

Friday, June 20th, 2014

http://boingboing.net/2014/06/10/vermeers-paintings-might-be.html

Wired 12.06: Cracking the Code to Romance

Sunday, June 15th, 2014

Interesting mention of bioinformatics
http://www.wired.com/wired/archive/12.06/dating.html

Calculate the value of $100000 in 1998 – Inflation on 100000 dollars – DollarTimes.com

Sunday, June 15th, 2014

DollarTimes is a useful site, eg $100K in ’89 => $198K now or $100K in ’93 => $144K now.
http://www.dollartimes.com/inflation/inflation.php?amount=100000&year=1998 NPV #finance