linkstream2 microblog

Spent a lot of June going to meetings, incl.

PCAWG Santa Cruz
ICSG2015 (with a sub-visit to Tel Aviv)
Festival of Genomics
RNA-Seq 2015 Boston

“Crowd-sourced” notebook of favorite tweets:

https://storify.com/markgerstein/favorite-tweets-from-june-conferences-incl-festiva

My tagged posts, mostly links to papers:

http://linkstream2.gerstein.info/tag/i0flg/
http://linkstream2.gerstein.info/tag/i0isgc/
http://linkstream2.gerstein.info/tag/i0rnaseq15/
http://linkstream2.gerstein.info/tag/i0pcawgsc/

Lectures I gave:

http://lectures.gersteinlab.org/summary/Interpreting-Transcriptome-in-terms-of-Regulome–20150625-i0rnaseq15/

http://lectures.gersteinlab.org/summary/SVs_n_Pseudogenes_Tricky_but_Crucial_Genomic_Features–20150623-i0flg/

http://lectures.gersteinlab.org/summary/Comparing-Transcriptomes-of-Distant-Org–20150610-i0isgc-tau/

http://lectures.gersteinlab.org/summary/3D-struct-to-interpret-networks-deep-sequencing–i0isgc-20150608/

https://en.m.wikipedia.org/wiki/Zikhron_Ya‘akov

http://goisrael.com/other/flashbooks/nl/Jerusalem%20%E2%80%93%20The%20Old%20City%20Accessible%20Tours/html/files/assets/downloads/publication.pdf

Disorder in 3500 #proteomes from viruses and 3 domains of life http://www.tandfonline.com/doi/abs/10.1080/07391102.2012.675145 Larger human fraction of disordered residues (>40%)

Journal of Biomolecular Structure and Dynamics

Volume 30, Issue 2, 2012
DOI:10.1080/07391102.2012.675145B
Xue, A. Keith Dunker & Vladimir N. Uversky

pages 137-149

http://www.sacred-destinations.com/israel/jerusalem-church-of-holy-sepulchre

http://www.haaretz.com/news/.premium-1.592872

http://www.theguardian.com/science/2015/jun/04/ubble-online-test-die-five-years-lancet-uk-biobank

http://www.nature.com/nrm/journal/v15/n11/full/nrm3884.html

NATURE REVIEWS MOLECULAR CELL BIOLOGY | ANALYSIS
William H. Hudson
& Eric A. Ortlund
Nature Reviews Molecular Cell Biology 15, 749–760 (2014) doi:10.1038/nrm3884

Func. Impact of Rare…Variation from Deep Sequencing…Exomes http://www.sciencemag.org/content/337/6090/64.abstract Relation to Protein Structural features (eg a-helices)

Science 6 July 2012:
Vol. 337 no. 6090 pp. 64-69
DOI: 10.1126/science.1219240

Evolution and Functional Impact of Rare Coding Variation from Deep Sequencing of Human Exomes

Jacob A. Tennessen1,*,
Abigail W. Bigham2,*,†,
Timothy D. O’Connor1,*,
Wenqing Fu1,
Eimear E. Kenny3,
Simon Gravel3,
Sean McGee1,
Ron Do4,5,
Xiaoming Liu6,
Goo Jun7,
Hyun Min Kang7,
Daniel Jordan8,
Suzanne M. Leal9,
Stacey Gabriel4,
Mark J. Rieder1,
Goncalo Abecasis7,
David Altshuler4,
Deborah A. Nickerson1,
Eric Boerwinkle6,10,
Shamil Sunyaev4,8,
Carlos D. Bustamante3,
Michael J. Bamshad1,2,‡,
Joshua M. Akey1,‡,
Broad GO,
Seattle GO,
on behalf of the NHLBI Exome Sequencing Project

Segal cites: Measurements of 1000s of…designed promoters
http://www.nature.com/nbt/journal/v30/n6/full/nbt.2205.html Num. binding sites correlated w/ expr., for 1st few #ICSG2015