Posts Tagged ‘funseq’

HaploReg: a resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants

Wednesday, November 27th, 2013

HaploReg explores functional annotations, such as chromatin states in varied cell types, sequence conservation, regulatory motif
alterations and eQTLs, of linked SNPs or indels within LD block of queried SNPs. The output provides a the guide to develop hypotheses of functional impact of non-coding variants, especially GWAS SNPs. HaploReg is currently limited to known variants (e.g. 1000 Genome variants and dbSNPs) and is unable to deal with private variants.

DDN News article on FunSeq

Wednesday, November 20th, 2013

cancer DNA study

Tuesday, November 19th, 2013

GEMINI: Integrative Exploration of Genetic Variation and Genome Annotations

Sunday, September 1st, 2013

no website, github + readthedocs distribution