linkstream2 microblog

An interesting blog post on data release by consortia including ENCODE. http://massgenomics.org/2013/06/data-sharing-embargo.html

From
http://www.ncbi.nlm.nih.gov/books/NBK3827/#pubmedhelp.Search_Field_Descrip some useful field descriptors, include:

Last author = [Lastau]
First author = [1au]
Grant = [GR]

Here are some examples employing these from the end of 2012:

(1) My overall query (from papers page, http://papers.gersteinlab.org) =

((Gerstein M[Author] NOT (1957[dp] : 1990[dp])) NOT 10787728[UID] NOT 11744447[UID] NOT 14663468[UID] NOT 14730174[UID] NOT 16081066[UID] NOT 14663468[UID] NOT 17270657[UID] NOT 21243890[UID] NOT
21406498[UID] NOT 21945273[UID]OR 15499007[UID] OR 17571346[UID] OR 17571346[UID] OR 8877505[UID] OR 8816770[UID] OR 7540695[UID] OR 7567918[UID] OR 7567918[UID] OR 7577841[UID] OR 7567917[UID] OR 7643385[UID] OR 8749848[UID] OR 8808580[UID] OR 8120887[UID] OR 8029203[UID] OR 8204609[UID] OR 7922041[UID] OR 7584390[UID] OR 8078776[UID] OR 8428572[UID] OR 8429559[UID] OR 8464069[UID] OR 8234227[UID] OR 8230220[UID] OR 1584800[UID] OR 2067013[UID] OR 20981092[UID] OR 21526222[UID])

==> yields 426 papers (from my total of 449)

(2) Last author papers

(2a) Gerstein M[Lastau] AND
==> yields 242 last author papers

(2b) GM[GR] AND Gerstein M[lastau] AND
==> yields 33 of 242 last author papers supported by NIH/NIGMS

(2c) GM[HG] AND Gerstein M[lastau] AND
==> yields 45 of 242 last author papers supported by NIH/NHGRI

(3) 1st author papers

(3a) Gerstein M[1au] AND
==> yields 41 first author papers

(3b) Gerstein M[lastau] AND Gerstein M[1au] AND
==> yields 11 sole author papers

>$1k/yr for subs to Times & Journal, isn’t sustainable for avg. incomes of $50k/yr
http://www.newyorker.com/online/blogs/johncassidy/2012/12/memo-to-murdoch-and-sulzberger-you-are-now-luxury-goods-manufacturers.html

http://impactstory.org/

R Peng blogged about a reaction to Yale Roundtable
Declaration from 2009.
http://simplystatistics.org/post/35778860973/reproducible-research-with-us-or-against-us

http://www.economist.com/node/21559317

http://scholarlykitchen.sspnet.org/2012/10/22/somethings-rotten-in-bethesda-the-troubling-tale-of-pubmed-central-pubmed-and-elife

http://www.the-scientist.com/?articles.view/articleNo/32603/title/Predicting%20Publishing%20Futures http://www.nature.com/nature/journal/v489/n7415/full/489201a.html http://klab.smpp.northwestern.edu/h-index.html

http://www.sciencemag.org/content/early/2012/10/10/science.1227833.abs

http://scholarlykitchen.sspnet.org/2012/04/24/googles-new-scholar-metrics-have-potential-but-also-prove-problematic/