haploseq
http://www.nature.com/nbt/journal/vaop/ncurrent/abs/nbt.2728.html
Whole-genome haplotype reconstruction using proximity-ligation and shotgun sequencing
HaploSeq: #haplotype reconstruction using proximity-ligation. Nice adaptation of functional genomics tech to assembly
http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.2728.html